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Publications about 'fMRI'

Thesis

  1. S.J. Kiebel. Anatomically informed basis functions. PhD thesis, University College London, 2000. Keyword(s): spatial, fMRI. [bibtex-entry]


Articles in journal or book chapters

  1. J. Daunizeau, L. Lemieux, A.E. Vaudano, K.J. Friston, and K.E. Stephan. An electrophysiological validation of stochastic DCM for fMRI. Frontiers in Computational Neuroscience, 6(103), 2013. Keyword(s): DCM. [bibtex-entry]


  2. J. Daunizeau, K.E. Stephan, and K.J. Friston. Stochastic Dynamic Causal Modelling of fMRI data: should we care about neural noise?. NeuroImage, 62(1):464-481, 2012. Keyword(s): DCM. [bibtex-entry]


  3. K.H Brodersen, T.M. Schofield, A.P. Leff, C.S. Ong, E.I. Lomakina, J.M. Buhmann, and K.E. Stephan. Generative Embedding for Model-Based Classification of fMRI Data. PLOS Computational Biology, 7(6):e1002079, 2011. Keyword(s): DCM. [bibtex-entry]


  4. C. Chu, J. Mourão-Miranda, Y.C. Chiu, N. Kriegeskorte, G. Tan, and J. Ashburner. Utilizing temporal information in fMRI decoding: Classifier using kernel regression methods. NeuroImage, 58(2):560-571, 2011. [bibtex-entry]


  5. C. Chu, Y. Ni, G. Tan, C.J. Saunders, and J. Ashburner. Kernel regression for fMRI pattern prediction. NeuroImage, 56(2):662-673, 2011. [bibtex-entry]


  6. M.J. Rosa, J. Kilner, and W.D. Penny. Bayesian Comparison of Neurovascular Coupling Models Using EEG-fMRI. PLOS Computational Biology, 7(6):e1002070, 2011. Keyword(s): BMC. [bibtex-entry]


  7. R.N.A. Henson, G. Flandin, K.J. Friston, and J. Mattout. A Parametric Empirical Bayesian framework for fMRI-constrained MEG/EEG source reconstruction. Human Brain Mapping, 31(10):1512-1531, 2010. [bibtex-entry]


  8. M.J. Rosa, J. Daunizeau, and K.J. Friston. EEG-fMRI integration : a critical review of biophysical modelling and data analysis approaches. J. Integrative Neurosci., 9(4):453-476, 2010. [bibtex-entry]


  9. K.E. Stephan and K.J. Friston. Analyzing effective connectivity with functional magnetic resonance imaging. WIREs Cognitive Sience, 1:446-459, 2010. Keyword(s): DCM, fMRI. [bibtex-entry]


  10. J. Ashburner. Preparing fMRI data for statistical analysis. Functional MRI Techniques. Humana Press. Filippi M (ed.), 2009. [bibtex-entry]


  11. M.J. Rosa, J. Kilner, F. Blankenburg, O. Josephs, and W.D. Penny. Estimating the transfer function from neuronal activity to BOLD using simultaneous EEG-fMRI. NeuroImage, 2009. [bibtex-entry]


  12. G. Flandin and K.J. Friston. Statistical Parametric Mapping. Scholarpedia, 3(4):6232, 2008. Keyword(s): fMRI, introduction. [bibtex-entry]


  13. L. Harrison, W.D. Penny, J. Daunizeau, and K.J. Friston. Diffusion-based spatial priors for functional magnetic resonance images. NeuroImage, 41(2):408-423, 2008. Keyword(s): fMRI, spatial, bayesian. [bibtex-entry]


  14. L. Harrison, W.D. Penny, G. Flandin, C. Ruff, N. Weiskopf, and K.J. Friston. Sparse diffusion-based spatial models for functional magnetic resonance images. NeuroImage, 2008. Keyword(s): fMRI, spatial. [bibtex-entry]


  15. A.C. Marreiros, S.J. Kiebel, and K.J. Friston. Dynamic causal modelling for fMRI: A two-state model. NeuroImage, 39:269-278, 2008. Keyword(s): DCM. [bibtex-entry]


  16. K.E. Stephan, L. Kasper, L. Harrison, J. Daunizeau, H. den Ouden, M. Breakspear, and K.J. Friston. Nonlinear Dynamic Causal Models for FMRI. NeuroImage, 42(2):649-662, 2008. Keyword(s): DCM, fMRI. [bibtex-entry]


  17. J. Crinion, J. Ashburner, A. Leff, M. Brett, C.J. Price, and K.J. Friston. Spatial normalization of lesioned brains: Performance evaluation and impact on fMRI analyses. NeuroImage, 37(3):866-875, 2007. Keyword(s): spatial, normalisation, mri. [bibtex-entry]


  18. G. Flandin and W.D. Penny. Bayesian fMRI data analysis with sparse spatial basis function priors. NeuroImage, 34(3):1108-1125, 2007. Keyword(s): PPM, Bayesian, fMRI, GLM, spatial, hierarchical. [bibtex-entry]


  19. L. Harrison, W.D. Penny, J. Ashburner, N. Trujillo-Bareto, and K.J. Friston. Diffusion-based spatial priors for imaging. NeuroImage, 38:677-695, 2007. Keyword(s): fMRI, GLM, spatial. [bibtex-entry]


  20. S.J. Kiebel, S. Klöppel, N. Weiskopf, and K.J. Friston. Dynamic causal modeling: A generative model of slice timing in fMRI. NeuroImage, 34:1487-1496, 2007. Keyword(s): fMRI, DCM, sampling. [bibtex-entry]


  21. W.D. Penny and K.J. Friston. Functional Imaging. Scholarpedia, 2(5):1478, 2007. Keyword(s): fMRI, EEG, MEG, introduction. [bibtex-entry]


  22. K.E. Stephan, L. Harrison, S.J. Kiebel, O. David, W.D. Penny, and K.J. Friston. Dynamic causal models of neural system dynamics: current state and future extensions. Journal of Biosciences, pp 129-144, 2007. Keyword(s): DCM, fMRI. [bibtex-entry]


  23. K.E. Stephan, J.C. Marshall, W.D. Penny, K.J. Friston, and G.R. Fink. Interhemispheric integration of visual processing during task-driven lateralization. Journal of Neuroscience, 27:3512-3522, 2007. Keyword(s): DCM, fMRI. [bibtex-entry]


  24. U. Noppeney and W.D. Penny. Two approaches to repetition suppression. Human Brain Mapping, 27:411-416, 2006. Keyword(s): fMRI. [bibtex-entry]


  25. K.J. Friston, K.E. Stephan, T.E. Lund, A. Morcom, and S.J. Kiebel. Mixed-effects and fMRI studies. NeuroImage, 24:244-252, 2005. Keyword(s): fMRI, GLM. [bibtex-entry]


  26. L. Harrison, O. David, and K.J. Friston. Stochastic models of neuronal dynamics. NeuroImage, 360:1075-1091, 2005. Keyword(s): fMRI, GLM, spatial. [bibtex-entry]


  27. W.D. Penny, G. Flandin, and N. Trujillo-Bareto. Bayesian Comparison of Spatially Regularised General Linear Models. Human Brain Mapping, 28:275-293, 2005. Keyword(s): Bayesian, fMRI, PPM, GLM. [bibtex-entry]


  28. W.D. Penny, Z. Ghahramani, and K.J. Friston. Bilinear Dynamical Systems. Phil Trans R Soc B, 360(1457):983-993, 2005. Keyword(s): Dynamic, Markov, fMRI. [bibtex-entry]


  29. W.D. Penny, N. Trujillo-Bareto, and K.J. Friston. Bayesian fMRI time series analysis with spatial priors. NeuroImage, 24(2):350-362, 2005. Keyword(s): Spatial, fMRI. [bibtex-entry]


  30. W.D. Penny and K.J. Friston. Classical and Bayesian Iinference in fMRI. In L. Landini, editor, Advanced Image Processing in Magnetic Resonance Imaging. Marcel Dekker, 2004. Keyword(s): introduction. [bibtex-entry]


  31. W.D. Penny, K.E. Stephan, A. Mechelli, and K.J. Friston. Comparing Dynamic Causal Models. NeuroImage, 22(3):1157-1172, 2004. Keyword(s): Bayesian, connectivity, fMRI, DCM, BMC. [bibtex-entry]


  32. K.E. Stephan, L. Harrison, W.D. Penny, and K.J. Friston. Biophysical models of fMRI responses. Current Opinion in Neurobiology, 14(5):629-635, 2004. [bibtex-entry]


  33. R.N.A. Henson. Analysis of fMRI time series. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, K.J. Friston, C.J. Price, S. Zeki, J. Ashburner, and W.D. Penny, editors, Human Brain Function. Academic Press, 2nd edition, 2003. Keyword(s): GLM, introduction, contrasts. [bibtex-entry]


  34. W.D. Penny and K.J. Friston. Classical and Bayesian inference. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, K.J. Friston, C.J. Price, S. Zeki, J. Ashburner, and W.D. Penny, editors, Human Brain Function. Academic Press, 2nd edition, 2003. Keyword(s): Bayesian, fMRI, hierarchical, nonsphericity, PPM, REML. [bibtex-entry]


  35. K.J. Friston, L. Harrison, and W.D. Penny. Dynamic Causal Modelling. NeuroImage, 19(4):1273-1302, 2003. Keyword(s): connectivity, fMRI, DCM. [bibtex-entry]


  36. D.R. Gitelman, W.D. Penny, J. Ashburner, and K.J. Friston. Modeling regional and psychophysiologic interactions in fMRI: the importance of hemodynamic deconvolution. NeuroImage, 19:200-207, 2003. Keyword(s): connectivity, fMRI, PPI. [bibtex-entry]


  37. L. Harrison, W.D. Penny, and K.J. Friston. Multivariate Autoregressive Modelling of fMRI time series. NeuroImage, 19(4):1477-1491, 2003. [bibtex-entry]


  38. R.N.A. Henson, Y. Goshen-Gottstein, T. Ganel, L.J. Otten, A. Quayle, and M.D. Rugg. Electrophysiological and hemodynamic correlates of face perception, recognition and priming. Cerebral Cortex, 13:793-805, 2003. Keyword(s): fMRI, EEG. [bibtex-entry]


  39. F.G. Hillary, J. Steffener, B.B. Biswal, G. Lange, J. DeLuca, and J. Ashburner. FMRI technology and traumatic brain injury rehabilitation: Guidelines for methodological and conceptual pitfalls. Journal of Head Trauma Rehabilitation, 17(5):411-430, 2003. Keyword(s): mri. [bibtex-entry]


  40. A. Mechelli, R.N.A. Henson, C.J. Price, and K.J. Friston. Comparing event-related and epoch analysis in blocked design fMRI. NeuroImage, 18(3):806-810, 2003. Keyword(s): design, event-related, fMRI. [bibtex-entry]


  41. A. Mechelli, C.J. Price, R.N.A. Henson, and K.J. Friston. Estimating efficiency a priori: a comparison of blocked and randomized designs. NeuroImage, 18(3):798-805, 2003. Keyword(s): design, event-related, fMRI. [bibtex-entry]


  42. W.D. Penny and K.J. Friston. Mixtures of General Linear Models for Functional Neuroimaging. IEEE Transactions on Medical Imaging, 22(4):504-514, 2003. Keyword(s): Mixture, GLM, Bayesian, fMRI, spatial, EM. [bibtex-entry]


  43. W.D. Penny, S.J. Kiebel, and K.J. Friston. Variational Bayesian Inference for fMRI time series. NeuroImage, 19(3):727-741, 2003. Keyword(s): autocorrelation, Bayesian, fMRI, PPM. [bibtex-entry]


  44. T.D. Wager and T.E. Nichols. Optimization of Experimental Design in fMRI: A General Framework Using a Genetic Algorithm. NeuroImage, 18:293-209, 2003. Keyword(s): design. [bibtex-entry]


  45. K.J. Friston. Bayesian Estimation of Dynamical Systems: An Application to fMRI. NeuroImage, 16:513-530, 2002. Keyword(s): dynamical, Bayesian, fMRI. [bibtex-entry]


  46. K.J. Friston, D.E. Glaser, R.N.A. Henson, S.J. Kiebel, C. Phillips, and J. Ashburner. Classical and Bayesian Inference in Neuroimaging: Applications. NeuroImage, 16:484-512, 2002. Keyword(s): Bayesian, fMRI, PPM. [bibtex-entry]


  47. R.N.A. Henson, C.J. Price, M.D. Rugg, R. Turner, and K.J. Friston. Detecting latency differences in event-related BOLD responses: application to words versus non-words and initial versus repeated face presentations. NeuroImage, 15(1):83-97, 2002. Keyword(s): fMRI, event-related. [bibtex-entry]


  48. R.N.A. Henson, T. Shallice, M.L. Gorno-Tempini, and R. Dolan. Face repetition effects in implicit and explicit memory tests as measured by fMRI. Cerebral Cortex, 12:178-186, 2002. Keyword(s): fMRI. [bibtex-entry]


  49. C. Hutton, A. Bork, O. Josephs, R. Deichmann, J. Ashburner, and R. Turner. Image distortion correction in fMRI: A quantitative evaluation. NeuroImage, 16:217-240, 2002. [bibtex-entry]


  50. D. Veltman, A. Mechelli, K.J. Friston, and C.J. Price. The importance of distributed sampling in blocked functional magnetic resonance imaging designs. NeuroImage, 17(3):1203-1206, 2002. Keyword(s): design, event-related, fMRI. [bibtex-entry]


  51. R.N.A. Henson, M.D. Rugg, and K.J. Friston. The choice of basis functions in event-related fMRI. NeuroImage, 13(6):149, June 2001. Note: Supplement 1. Keyword(s): event-related. [bibtex-entry]


  52. K.J. Friston and C. Buchel. Attentional modulation of effective connectivity from V2 to V5/MT in humans. Proc. Natl. Acad. Sci. USA, 97(13):7591-7596, 2000. Keyword(s): connectivity, fMRI. [bibtex-entry]


  53. K.J. Friston, O. Josephs, E. Zarahn, A.P. Holmes, S. Rouquette, and J.B. Poline. To Smooth or Not to Smooth? Bias and Efficiency in fMRI Time-Series Analysis. NeuroImage, 12:196-208, 2000. Keyword(s): fMRI, autocorrelation, nonsphericity. [bibtex-entry]


  54. K.J. Friston, A. Mechelli, R. Turner, and C.J. Price. Nonlinear responses in fMRI: The Balloon model, Volterra kernels and other hemodynamics. NeuroImage, 12:466-477, 2000. Keyword(s): nonlinear, fMRI, dynamical. [bibtex-entry]


  55. J.B. Hopfinger, C. Buchel, A.P. Holmes, and K.J. Friston. A study of analysis parameters that influence the sensitivity of event-related fMRI analyses. NeuroImage, 11:326-333, 2000. Keyword(s): event-related, fMRI. [bibtex-entry]


  56. S.J. Kiebel, R. Goebel, and K.J. Friston. Anatomically Informed Basis Functions. NeuroImage, 11(6):656-667, 2000. Keyword(s): fMRI, MRI, spatial. [bibtex-entry]


  57. D. McGonigle, A. Howseman, B.S. Athwal, K.J. Friston, R.S.J. Frackowiak, and A.P. Holmes. Variability in fMRI: an examination of intersession differences. NeuroImage, 11(6):708-734, 2000. Keyword(s): RFX, group. [bibtex-entry]


  58. C. Buchel, J.T. Coull, and K.J. Friston. The predictive value of changes in effective connectivity for human learning. Science, pp 1538-1541, 1999. Keyword(s): connectivity, fMRI. [bibtex-entry]


  59. K.J. Friston, A.P. Holmes, C.J. Price, C. Buchel, and K.J. Worsley. Multisubject fMRI Studies and Conjunction Analyses. NeuroImage, 10:385-396, 1999. Keyword(s): group, conjunction, fMRI. [bibtex-entry]


  60. K.J. Friston, E. Zarahn, O. Josephs, R.N.A. Henson, and A.M. Dale. Stochastic designs in event-related fMRI. NeuroImage, 10:607-619, 1999. Keyword(s): event-related, fMRI, design. [bibtex-entry]


  61. O. Josephs and R.N.A. Henson. Event-related functional magnetic resonance imaging: modelling, inference and optimization. Phil. Trans. R. Soc. London B, 354:1215-1228, 1999. Keyword(s): event-related, fMRI, design. [bibtex-entry]


  62. C.J. Price, D.J. Veltman, J. Ashburner, O. Josephs, and K.J. Friston. The critical relationship between the timing of the stimulus presentation and data acquisition in blocked designs with fMRI. NeuroImage, 10:36-44, 1999. Keyword(s): fMRI. [bibtex-entry]


  63. B. A. Strange, C.M. Portas, R. Dolan, A.P. Holmes, and K.J. Friston. Random effects analyses for event-related fMRI. NeuroImage, 9:36, 1999. Keyword(s): RFX, event-related, fMRI. [bibtex-entry]


  64. C. Buchel and K.J. Friston. Dynamic Changes in Effective Connectivity Characterized by Variable Parameter Regression and Kalman Filtering. Human Brain Mapping, 6(5):403-408, 1998. Keyword(s): connectivity, fMRI. [bibtex-entry]


  65. C. Buchel, A.P. Holmes, G. Rees, and K.J. Friston. Characterizing stimulus-response functions using nonlinear regressors in parametric fMRI experiments. NeuroImage, 8:140-148, 1998. Keyword(s): nonlinear, parametric, fMRI. [bibtex-entry]


  66. K.J. Friston. Modes or models: a critique on independent component analysis for fMRI. Trends in Cognitive Science, 2:373-374, 1998. Keyword(s): connectivity. [bibtex-entry]


  67. K.J. Friston, P. Fletcher, O. Josephs, A.P. Holmes, M.D. Rugg, and R. Turner. Event-related fMRI: characterizing differential responses. NeuroImage, 7:30-40, 1998. Keyword(s): event-related, fMRI. [bibtex-entry]


  68. K.J. Friston, O. Josephs, G. Rees, and R. Turner. Non-linear event-related responses in fMRI. Magnetic Resonance in Medicine, 39:41-52, 1998. Keyword(s): nonlinear, event-related, fMRI. [bibtex-entry]


  69. J. Ashburner and K.J. Friston. Spatial transformation of images. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, and J.C. Mazziotta, editors, Human Brain Function, pages 43-58. Academic Press USA, 1997. Keyword(s): spatial, registration, normalisation, MRI, PET, fMRI. [bibtex-entry]


  70. A.P. Holmes, J.B. Poline, and K.J. Friston. Characterizing brain images with the general linear model. In R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, and J.C. Mazziotta, editors, Human Brain Function, pages 59-84. Academic Press USA, 1997. Keyword(s): GLM, introduction, PET, fMRI. [bibtex-entry]


  71. C. Buchel and K.J. Friston. Modulation of connectivity in visual pathways by attention: Cortical interactions evaluated with structural equation modelling and fMRI. Cerebral Cortex, 7:768-778, 1997. Keyword(s): connectivity, fMRI. [bibtex-entry]


  72. C. Buchel, R. Turner, and K.J. Friston. Lateral geniculate activations can be detected using intersubject averaging and fMRI. Magnetic Resonance in Medicine, 38(691--694), 1997. Keyword(s): fMRI. [bibtex-entry]


  73. K.J. Friston. Testing for anatomically specified regional effects. Human Brain Mapping, 5:133-136, 1997. Keyword(s): RFT, PET, fMRI. [bibtex-entry]


  74. K.J. Friston, C. Buchel, G.R. Fink, J. Morris, E. Rolls, and R. Dolan. Psychophysiological and modulatory interactions in Neuroimaging. NeuroImage, 6:218-229, 1997. Keyword(s): connectivity, fMRI, PPI. [bibtex-entry]


  75. O. Josephs, R. Turner, and K.J. Friston. Event-related fMRI. Human Brain Mapping, 5:243-248, 1997. Keyword(s): event-related, fMRI. [bibtex-entry]


  76. K.J. Friston, S. Williams, R. Howard, R.S.J. Frackowiak, and R. Turner. Movement-Related Effects in fMRI Time-Series. Magnetic Resonance in Medicine, 35:346-355, 1996. Keyword(s): registration, spatial, fMRI. [bibtex-entry]


  77. K.J. Friston, C. Frith, R.S.J. Frackowiak, and R. Turner. Characterizing Dynamic Brain Responses with fMRI: A multivariate Approach. NeuroImage, 2:166-172, 1995. Keyword(s): connectivity, dynamical, multivariate, fMRI. [bibtex-entry]


  78. K.J. Friston, C. Frith, R. Turner, and R.S.J. Frackowiak. Characterizing evoked hemodynamics with fMRI. NeuroImage, 2:157-165, 1995. Keyword(s): fMRI, event-related. [bibtex-entry]


  79. K.J. Friston, A.P. Holmes, J.B. Poline, P. J. Grasby, S. C. R. Williams, R.S.J. Frackowiak, and R. Turner. Analysis of fMRI Time Series Revisited. NeuroImage, 2:45-53, 1995. Keyword(s): fMRI, autocorrelation, nonsphericity. [bibtex-entry]


  80. K.J. Friston, A.P. Holmes, J.B. Poline, C.J. Price, and C. Frith. Detecting Activations in PET and fMRI: Levels of Inference and Power. NeuroImage, 40:223-235, 1995. Keyword(s): RFT, PET, fMRI. [bibtex-entry]


  81. K.J. Friston, L.G. Ungerleider, P. Jezzard, and R. Turner. Characterizing modulatory interactions between V1 and V2 in human cortex with fMRI. Human Brain Mapping, 2:211-224, 1995. Keyword(s): connectivity, fMRI. [bibtex-entry]


  82. K.J. Worsley and K.J. Friston. Analysis of fMRI Time-Series Revisited - Again. NeuroImage, 2:173-181, 1995. Keyword(s): fMRI, autocorrelation, nonsphericity. [bibtex-entry]


  83. K.J. Friston, P. Jezzard, and R. Turner. Analysis of Functional MRI Time-Series. Human Brain Mapping, 1:153-171, 1994. Keyword(s): fMRI, autocorrelation, nonsphericity. [bibtex-entry]


  84. C.J. Price, R. Wise, S. Ramsay, K.J. Friston, D. Howard, K. Patterson, and R.S.J. Frackowiak. Regional response differences withing the human auditory cortex when listening to words. Neuroscience Letters, 11:179-182, 1992. Keyword(s): parametric, fMRI. [bibtex-entry]


Conference articles

  1. W.D. Penny and G. Flandin. Bayesian analysis of fMRI data with spatial priors. In Proceedings of the Joint Statistical Meeting (JSM), Section on Statistical Graphics [CDROM], 2005. Note: Alexandria, VA: American Statistical Association. Keyword(s): PPM, Bayesian, fMRI. [bibtex-entry]


  2. C. Hutton, R. Deichmann, R. Turner, and J. L. R. Andersson. Combined correction for geometric distortion and its interaction with head motion in fMRI. In Proc. ISMRM 12, Kyoto, Japan, 2004. [bibtex-entry]


  3. R.N.A. Henson, J. Andersson, and K.J. Friston. Multivariate SPM: Application to basis function characterisations of event-related fMRI responses. In NeuroImage, volume 11, pages 468, 2000. Keyword(s): fMRI, event-related, multivariate. [bibtex-entry]


  4. R.N.A. Henson, C. Buchel, O. Josephs, and K.J. Friston. The slice-timing problem in event-related fMRI. In NeuroImage, volume 9, pages 125, 1999. Keyword(s): fMRI. [bibtex-entry]


Internal reports

  1. W.D. Penny and G. Flandin. Bayesian analysis of single-subject fMRI: SPM implementation. Technical report, Wellcome Department of Imaging Neuroscience, 2005. Keyword(s): PPM, Bayesian, fMRI. [bibtex-entry]


  2. W.D. Penny. Wavelet smoothing of fMRI activation images. Technical report, Wellcome Department of Imaging Neuroscience, ION, UCL, 2002. Keyword(s): fMRI, spatial. [bibtex-entry]



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